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•Folder containing a covering letter dated 26 June 1933 from Logan Turner to W. W. Smith requesting the preservation of an autograph notebook belonging to John M. McFarlane in the library of the Dept. of Botany, Edinburgh. The notebook contains ‘Remarks on the Fossil flora of Edinburgh and Neighbourhood, by John M. McFarlane, session 1877 and a pencilled copy of transcript of Foster & Balfour’s “Embryology”
•McFarlane, John M. (Edinburgh & USA) correspondence dated 1888 – 1905, filed with “Balfour, I. Bayley” papers under, “McFarlane, John M.”

•File containing typed miscellaneous notes regarding his life and work

•Papers referencing obituaries. Mackay, John (Biographical. Index of British & Irish Botanists, p.111); Scots Magazine, 1802, Vol. LXIV, p.448; Edinburgh Courant, 22 April 1802.
•8 page extract of article on The Death of John Mackay, A Worthy Young Man, and an Eminent Botanist - ‘Edinburgh Evening Courant’ 3rd June 1802
•John Mackay, A Gifted Young Botanist, 1772 – 1802, A Link With Leith by D.W.K.
•Copy of letters dated Nov. 1800 – May 1802 to N.J. Winch – filed under “Winch, N.J.” also copy of letters dated 3 June 1801 to G. Houston, Paisley & Mr. Combie Inverness introducing N.J. Winch
•Typed extract from Scots Magazine, 1803, Vol. LXV, pp.96 -97, tribute to John Mackay.
•Letter from John Mackay at Botanic Garden, Leith Walk, dated 6 March 1800, to Lt. Col. Brodie, M.P. at Brodie House by Forres (presented by Sir George Taylor, 8 June 1963)
•3 manuscript pages of Mackay’s records relating to ‘Smith’s English Botany’
•Typed extract from ‘Memoirs of the Wernerian Natural History Society, Vol.1, p.215 – A List of the rarer Plants observed in the neighbourhood of Edinburgh.