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• Ms. lectures on botany (1803–1806?), 44 pp.; Index Stirpium Officinalium, ut in Horto Regio Botanico Edinburgensi, 2 copies, 7 pp.; 1 copy, 4 pp., C. Stewart, printer; ms. note: “Edinburgh Evening Courant, Sept. 18, 1820. Nothing to be found on last page / Column 4.” 1 p.
• Correspondence and papers, including a ms. letter petitioning H.M. Treasury for an additional allowance to maintain the Botanic Garden, 1807; two ms. letters (with wax seals) from Archibald Menzies to Prof. Rutherford regarding seeds sent by Menzies, 1789; ms. copies of two letters from Archibald Dickson to I. Bayley Balfour, 1889 (originals with I. Bayley Balfour correspondence under “Dickson, Archibald”; ms. letter from Henry Paton, genealogist, to I. Bayley Balfour, regarding an inventory of Daniel Rutherford, 1909.